IL_4V9N_202

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_202 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.105

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V9N|1|CA|U|580
4V9N|1|CA|G|581
4V9N|1|CA|U|582
4V9N|1|CA|A|583
4V9N|1|CA|G|584
*
4V9N|1|CA|U|757
4V9N|1|CA|G|758
4V9N|1|CA|A|759
4V9N|1|CA|G|760
4V9N|1|CA|G|761

Current chains

Chain CA

16S rRNA (1504-MER)

Nearby chains

Chain CH

30S ribosomal protein S8

Chain CL

30S ribosomal protein S12

Chain CO

30S ribosomal protein S15

Chain CQ

30S ribosomal protein S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA