IL_4V9N_283

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V9N|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_283 not in the Motif Atlas

Geometric match to IL_5J7L_284

Geometric discrepancy: 0.1674

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V9N|1|DA|C|1043
4V9N|1|DA|G|1044
4V9N|1|DA|A|1045
4V9N|1|DA|A|1046
4V9N|1|DA|G|1047
4V9N|1|DA|A|1048
4V9N|1|DA|C|1049
4V9N|1|DA|A|1050
4V9N|1|DA|G|1051
*
4V9N|1|DA|U|1108
4V9N|1|DA|C|1109
4V9N|1|DA|G|1110
4V9N|1|DA|A|1111
4V9N|1|DA|G|1112

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6