IL_4V9O_242

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

4V9O|1|CA|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_242 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1245

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9O|1|CA|U|1468
4V9O|1|CA|A|1469
4V9O|1|CA|A|1470
4V9O|1|CA|G|1471
*
4V9O|1|CA|U|1520
4V9O|1|CA|G|1521
4V9O|1|CA|A|1522
4V9O|1|CA|U|1523
4V9O|1|CA|G|1524

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA