IL_4V9O_580

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUUUC*GAUGCA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_580 not in the Motif Atlas

Geometric match to IL_9AXU_040

Geometric discrepancy: 0.3987

The information below is about IL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95349.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V9O|1|GA|U|868
4V9O|1|GA|G|869
4V9O|1|GA|U|870
4V9O|1|GA|U|871
4V9O|1|GA|U|872
4V9O|1|GA|C|873
*
4V9O|1|GA|G|904
4V9O|1|GA|A|905
4V9O|1|GA|U|906
4V9O|1|GA|G|907
4V9O|1|GA|C|908
4V9O|1|GA|A|909

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GM

50S ribosomal protein L16