IL_4V9O_639

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_639 not in the Motif Atlas

Geometric match to IL_4V9F_023

Geometric discrepancy: 0.1947

The information below is about IL_4V9F_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V9O|1|GA|U|2292
4V9O|1|GA|G|2293
4V9O|1|GA|G|2294
*
4V9O|1|GA|C|2338
4V9O|1|GA|C|2339
4V9O|1|GA|A|2340

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GB

5S ribosomal RNA; 5S rRNA

Chain GO

50S ribosomal protein L18