IL_4V9O_705

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_705 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.2088

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

4V9O|1|HA|G|682
4V9O|1|HA|G|683
4V9O|1|HA|U|684
*
4V9O|1|HA|A|706
4V9O|1|HA|U|707
4V9O|1|HA|C|708

Current chains

Chain HA

16S rRNA

Nearby chains

Chain DG

30S ribosomal protein S7

Chain GC

50S ribosomal protein L2

Chain HK

30S ribosomal protein S11

Chain HR

30S ribosomal protein S18