IL_4V9O_712

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_712 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0968

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9O|1|HA|G|887
4V9O|1|HA|G|888
4V9O|1|HA|A|889
4V9O|1|HA|G|890
4V9O|1|HA|U|891
4V9O|1|HA|A|892
4V9O|1|HA|C|893
4V9O|1|HA|G|894
*
4V9O|1|HA|U|905
4V9O|1|HA|A|906
4V9O|1|HA|A|907
4V9O|1|HA|A|908
4V9O|1|HA|A|909
4V9O|1|HA|C|910

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HL

30S ribosomal protein S12