IL_4V9O_715

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V9O|1|HA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_715 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.191

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9O|1|HA|G|933
4V9O|1|HA|C|934
4V9O|1|HA|A|935
*
4V9O|1|HA|U|1380
4V9O|1|HA|U|1381
4V9O|1|HA|C|1382
4V9O|1|HA|C|1383
4V9O|1|HA|C|1384

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HG

30S ribosomal protein S7

Chain HI

30S ribosomal protein S9