IL_4V9O_728

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCG*CGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_728 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.3774

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V9O|1|HA|C|1129
4V9O|1|HA|A|1130
4V9O|1|HA|G|1131
4V9O|1|HA|C|1132
4V9O|1|HA|G|1133
*
4V9O|1|HA|C|1141
4V9O|1|HA|G|1142
4V9O|1|HA|G|1143

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HI

30S ribosomal protein S9