IL_4V9O_731

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAU*GUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_731 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3164

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V9O|1|HA|G|1244
4V9O|1|HA|C|1245
4V9O|1|HA|A|1246
4V9O|1|HA|U|1247
*
4V9O|1|HA|G|1290
4V9O|1|HA|U|1291
4V9O|1|HA|G|1292
4V9O|1|HA|C|1293

Current chains

Chain HA

16S rRNA

Nearby chains

Chain CH

50S ribosomal protein L9

Chain HG

30S ribosomal protein S7

Chain HI

30S ribosomal protein S9

Chain HM

30S ribosomal protein S13