IL_4V9O_737

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_737 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1677

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9O|1|HA|G|1353
4V9O|1|HA|U|1354
4V9O|1|HA|G|1355
*
4V9O|1|HA|C|1367
4V9O|1|HA|A|1368
4V9O|1|HA|C|1369

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HG

30S ribosomal protein S7

Chain HI

30S ribosomal protein S9

Chain HJ

30S ribosomal protein S10

Chain HN

30S ribosomal protein S14