IL_4V9P_098

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_098 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1717

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9P|1|AA|C|2520
4V9P|1|AA|C|2521
4V9P|1|AA|U|2522
*
4V9P|1|AA|G|2543
4V9P|1|AA|G|2544
4V9P|1|AA|G|2545

Current chains

Chain AA

23S rRNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AJ

50S ribosomal protein L13

Chain AK

50S ribosomal protein L14