3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9P_103 not in the Motif Atlas
Homologous match to IL_5J7L_346
Geometric discrepancy: 0.0835
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4V9P|1|AA|C|2652
4V9P|1|AA|U|2653
4V9P|1|AA|A|2654
4V9P|1|AA|G|2655
4V9P|1|AA|U|2656
4V9P|1|AA|A|2657
4V9P|1|AA|C|2658
*
4V9P|1|AA|G|2663
4V9P|1|AA|G|2664
4V9P|1|AA|A|2665
4V9P|1|AA|C|2666
4V9P|1|AA|C|2667
4V9P|1|AA|G|2668

Current chains

Chain AA
23S rRNA

Nearby chains

Chain AG
50S ribosomal protein L6
Chain BV
elongation factor G

Coloring options:


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