IL_4V9P_360

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_360 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2336

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V9P|1|DA|C|1407
4V9P|1|DA|A|1408
4V9P|1|DA|C|1409
*
4V9P|1|DA|G|1491
4V9P|1|DA|A|1492
4V9P|1|DA|A|1493
4V9P|1|DA|G|1494

Current chains

Chain DA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain DL

30S ribosomal protein S12

Chain DV

elongation factor G

Chain DW

Viomycin