IL_4V9P_382

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V9P|1|EA|G|801, 4V9P|1|EA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_382 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V9P|1|EA|G|674
4V9P|1|EA|A|675
4V9P|1|EA|A|676
4V9P|1|EA|A|677
4V9P|1|EA|C|678
*
4V9P|1|EA|G|799
4V9P|1|EA|A|800
4V9P|1|EA|G|801
4V9P|1|EA|A|802
4V9P|1|EA|U|803
4V9P|1|EA|A|804
4V9P|1|EA|G|805
4V9P|1|EA|C|806

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EE

50S ribosomal protein L4

Chain EL

50S ribosomal protein L15