IL_4V9P_415

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_415 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.07

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9P|1|EA|C|1351
4V9P|1|EA|U|1352
4V9P|1|EA|A|1353
4V9P|1|EA|A|1354
4V9P|1|EA|G|1355
*
4V9P|1|EA|C|1376
4V9P|1|EA|G|1377
4V9P|1|EA|A|1378
4V9P|1|EA|U|1379
4V9P|1|EA|G|1380

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L34

Chain EC

50S ribosomal protein L2