IL_4V9P_423

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_423 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.2394

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9P|1|EA|U|1474
4V9P|1|EA|G|1475
4V9P|1|EA|U|1476
4V9P|1|EA|A|1477
4V9P|1|EA|G|1478
*
4V9P|1|EA|U|1513
4V9P|1|EA|G|1514
4V9P|1|EA|A|1515
4V9P|1|EA|G|1516
4V9P|1|EA|G|1517

Current chains

Chain EA

23S rRNA

Nearby chains

Chain HC

30S ribosomal protein S3