IL_4V9P_467

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_467 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0749

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9P|1|EA|G|2737
4V9P|1|EA|A|2738
4V9P|1|EA|U|2739
4V9P|1|EA|A|2740
4V9P|1|EA|A|2741
4V9P|1|EA|G|2742
*
4V9P|1|EA|C|2762
4V9P|1|EA|G|2763
4V9P|1|EA|A|2764
4V9P|1|EA|A|2765
4V9P|1|EA|A|2766
4V9P|1|EA|C|2767

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E4

50S ribosomal protein L36

Chain EG

50S ribosomal protein L6

Chain EJ

50S ribosomal protein L13