IL_4V9P_486

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_486 not in the Motif Atlas

Geometric match to IL_5J7L_352

Geometric discrepancy: 0.2785

The information below is about IL_5J7L_352

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4V9P|1|FA|G|75
4V9P|1|FA|G|76
*
4V9P|1|FA|U|93
4V9P|1|FA|G|94
4V9P|1|FA|C|95

Current chains

Chain FA

16S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA