IL_4V9P_492

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_492 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.292

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9P|1|FA|G|203
4V9P|1|FA|G|204
4V9P|1|FA|A|205
4V9P|1|FA|C|206
*
4V9P|1|FA|G|213
4V9P|1|FA|C|214

Current chains

Chain FA

16S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA