IL_4V9P_516

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_516 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0718

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9P|1|FA|G|887
4V9P|1|FA|G|888
4V9P|1|FA|A|889
4V9P|1|FA|G|890
4V9P|1|FA|U|891
4V9P|1|FA|A|892
4V9P|1|FA|C|893
4V9P|1|FA|G|894
*
4V9P|1|FA|U|905
4V9P|1|FA|A|906
4V9P|1|FA|A|907
4V9P|1|FA|A|908
4V9P|1|FA|A|909
4V9P|1|FA|C|910

Current chains

Chain FA

16S rRNA

Nearby chains

Chain FL

30S ribosomal protein S12