IL_4V9P_539

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_539 not in the Motif Atlas

Geometric match to IL_5VCI_002

Geometric discrepancy: 0.1412

The information below is about IL_5VCI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|FA|G|1405
4V9P|1|FA|U|1406
4V9P|1|FA|C|1407
*
4V9P|1|FA|G|1494
4V9P|1|FA|U|1495
4V9P|1|FA|C|1496

Current chains

Chain FA

16S rRNA

Nearby chains

Chain EA

Large subunit ribosomal RNA; LSU rRNA

Chain FV

elongation factor G

Chain FW

Viomycin