IL_4V9P_575

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_575 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.2362

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

4V9P|1|GA|G|862
4V9P|1|GA|A|863
*
4V9P|1|GA|U|913
4V9P|1|GA|G|914
4V9P|1|GA|C|915

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GB

5S ribosomal RNA; 5S rRNA

Chain GM

50S ribosomal protein L16

Chain GW

50S ribosomal protein L27