IL_4V9P_589

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

4V9P|1|GA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_589 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.3213

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9P|1|GA|G|1059
4V9P|1|GA|U|1060
4V9P|1|GA|U|1061
4V9P|1|GA|G|1062
4V9P|1|GA|G|1063
*
4V9P|1|GA|C|1075
4V9P|1|GA|C|1076
4V9P|1|GA|A|1077
4V9P|1|GA|U|1078
4V9P|1|GA|C|1079

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GI

50S ribosomal protein L11

Chain GM

50S ribosomal protein L16