IL_4V9P_676

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

4V9P|1|HA|U|244, 4V9P|1|HA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_676 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0874

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4V9P|1|HA|G|242
4V9P|1|HA|A|243
4V9P|1|HA|U|244
4V9P|1|HA|U|245
4V9P|1|HA|A|246
4V9P|1|HA|G|247
*
4V9P|1|HA|C|277
4V9P|1|HA|G|278
4V9P|1|HA|A|279
4V9P|1|HA|C|280
4V9P|1|HA|G|281
4V9P|1|HA|A|282
4V9P|1|HA|U|283
4V9P|1|HA|C|284

Current chains

Chain HA

16S rRNA

Nearby chains

Chain HL

30S ribosomal protein S12

Chain HQ

30S ribosomal protein S17