IL_4V9P_725

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_725 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1049

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9P|1|HA|G|1401
4V9P|1|HA|C|1402
4V9P|1|HA|C|1403
4V9P|1|HA|C|1404
*
4V9P|1|HA|G|1497
4V9P|1|HA|U|1498
4V9P|1|HA|A|1499
4V9P|1|HA|A|1500
4V9P|1|HA|C|1501

Current chains

Chain HA

16S rRNA

Nearby chains

Chain GA

Large subunit ribosomal RNA; LSU rRNA