IL_4V9P_726

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_726 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.3758

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V9P|1|HA|C|1404
4V9P|1|HA|G|1405
4V9P|1|HA|U|1406
4V9P|1|HA|C|1407
*
4V9P|1|HA|G|1494
4V9P|1|HA|U|1495
4V9P|1|HA|C|1496
4V9P|1|HA|G|1497

Current chains

Chain HA

16S rRNA

Nearby chains

Chain GA

Large subunit ribosomal RNA; LSU rRNA

Chain HV

elongation factor G