IL_4V9Q_008

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCGUG*CC

Length

8 nucleotides

Bulged bases

4V9Q|1|AA|U|271|||D

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_008 not in the Motif Atlas

Geometric match to IL_7Q80_001

Geometric discrepancy: 0.1386

The information below is about IL_7Q80_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V9Q|1|AA|G|271
4V9Q|1|AA|U|271|||A
4V9Q|1|AA|C|271|||B
4V9Q|1|AA|G|271|||C
4V9Q|1|AA|U|271|||D
4V9Q|1|AA|G|272
*
4V9Q|1|AA|C|365|||A
4V9Q|1|AA|C|366|||B

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L9