IL_4V9Q_016

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_016 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0666

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4V9Q|1|AA|U|606
4V9Q|1|AA|U|607
4V9Q|1|AA|A|608
4V9Q|1|AA|A|609|||A
4V9Q|1|AA|G|609|||B
*
4V9Q|1|AA|C|618|||B
4V9Q|1|AA|G|619
4V9Q|1|AA|G|620
4V9Q|1|AA|A|621
4V9Q|1|AA|G|622

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AL

50S ribosomal protein L15