IL_4V9Q_027

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_027 not in the Motif Atlas

Geometric match to IL_7RQB_027

Geometric discrepancy: 0.0701

The information below is about IL_7RQB_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.1

Basepair signature

cWW-L-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|AA|U|858
4V9Q|1|AA|G|859
4V9Q|1|AA|U|860
4V9Q|1|AA|A|861
4V9Q|1|AA|G|862
*
4V9Q|1|AA|C|915
4V9Q|1|AA|G|916
4V9Q|1|AA|A|917
4V9Q|1|AA|A|918
4V9Q|1|AA|G|919

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AM

50S ribosomal protein L16

Chain AW

50S ribosomal protein L27