3D structure

PDB id
4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UAG*CA
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9Q_032 not in the Motif Atlas
Homologous match to IL_7RQB_032
Geometric discrepancy: 0.2763
The information below is about IL_7RQB_032
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_80097.1
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
17

Unit IDs

4V9Q|1|AA|U|877
4V9Q|1|AA|A|878
4V9Q|1|AA|G|879
*
4V9Q|1|AA|C|898
4V9Q|1|AA|A|899

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain AV
50S ribosomal protein L25

Coloring options:


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