IL_4V9Q_036

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V9Q|1|AA|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_036 not in the Motif Atlas

Homologous match to IL_7RQB_036

Geometric discrepancy: 0.0925

The information below is about IL_7RQB_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V9Q|1|AA|C|998
4V9Q|1|AA|U|999
4V9Q|1|AA|A|1000
4V9Q|1|AA|A|1001
4V9Q|1|AA|G|1002
*
4V9Q|1|AA|C|1153
4V9Q|1|AA|G|1154
4V9Q|1|AA|A|1155
4V9Q|1|AA|A|1156
4V9Q|1|AA|G|1157

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S ribosomal protein L20

Chain AR

50S ribosomal protein L21

Chain AZ

50S ribosomal protein L30