IL_4V9Q_059

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4V9Q|1|AA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_059 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.3681

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9Q|1|AA|G|1526
4V9Q|1|AA|G|1527
4V9Q|1|AA|A|1528
4V9Q|1|AA|A|1529
4V9Q|1|AA|G|1530
*
4V9Q|1|AA|U|1541
4V9Q|1|AA|G|1542
4V9Q|1|AA|A|1543
4V9Q|1|AA|C|1544
4V9Q|1|AA|A|1545
4V9Q|1|AA|A|1546
4V9Q|1|AA|C|1546|||B

Current chains

Chain AA

23S ribosomal RNA

Nearby chains