IL_4V9Q_063

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4V9Q|1|AA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_063 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0719

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4V9Q|1|AA|A|1669
4V9Q|1|AA|C|1670
4V9Q|1|AA|U|1671
4V9Q|1|AA|C|1672
4V9Q|1|AA|U|1673
4V9Q|1|AA|G|1674
*
4V9Q|1|AA|C|1990
4V9Q|1|AA|U|1991
4V9Q|1|AA|G|1992
4V9Q|1|AA|U|1993

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AK

50S ribosomal protein L14