IL_4V9Q_090
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_090 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1575
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V9Q|1|AA|C|2466
4V9Q|1|AA|C|2467
4V9Q|1|AA|G|2468
4V9Q|1|AA|A|2469
4V9Q|1|AA|G|2470
*
4V9Q|1|AA|C|2480
4V9Q|1|AA|G|2481
4V9Q|1|AA|G|2482
4V9Q|1|AA|C|2483
4V9Q|1|AA|G|2484
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AM
- 50S ribosomal protein L16
- Chain AV
- 50S ribosomal protein L25
Coloring options: