IL_4V9Q_099

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_099 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1016

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4V9Q|1|AA|C|2680
4V9Q|1|AA|C|2681
4V9Q|1|AA|U|2682
4V9Q|1|AA|C|2683
4V9Q|1|AA|U|2684
*
4V9Q|1|AA|A|2725
4V9Q|1|AA|U|2726
4V9Q|1|AA|G|2727

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AK

50S ribosomal protein L14

Chain AN

50S ribosomal protein L17

Chain AP

50S ribosomal protein L19