IL_4V9Q_125

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_125 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.165

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4V9Q|1|BA|G|292
4V9Q|1|BA|G|293
*
4V9Q|1|BA|U|304
4V9Q|1|BA|G|305
4V9Q|1|BA|G|306
4V9Q|1|BA|C|307
4V9Q|1|BA|C|308

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BP

30S ribosomal protein S16