IL_4V9Q_131

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_131 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1152

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9Q|1|BA|G|450
4V9Q|1|BA|A|451
4V9Q|1|BA|A|452
4V9Q|1|BA|A|453
4V9Q|1|BA|C|454
4V9Q|1|BA|C|455
*
4V9Q|1|BA|G|477
4V9Q|1|BA|A|478
4V9Q|1|BA|C|479
4V9Q|1|BA|U|480
4V9Q|1|BA|G|481
4V9Q|1|BA|A|482
4V9Q|1|BA|C|483

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain CI

50S ribosomal protein L9