IL_4V9Q_133

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V9Q|1|BA|A|532, 4V9Q|1|BA|U|534, 4V9Q|1|BA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_133 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.3725

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|BA|G|515
4V9Q|1|BA|U|516
4V9Q|1|BA|G|517
4V9Q|1|BA|C|518
4V9Q|1|BA|C|519
4V9Q|1|BA|A|520
4V9Q|1|BA|G|521
*
4V9Q|1|BA|C|528
4V9Q|1|BA|G|529
4V9Q|1|BA|G|530
4V9Q|1|BA|U|531
4V9Q|1|BA|A|532
4V9Q|1|BA|A|533
4V9Q|1|BA|U|534
4V9Q|1|BA|A|535
4V9Q|1|BA|C|536

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12