IL_4V9Q_138
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_138 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.1004
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V9Q|1|BA|U|605
4V9Q|1|BA|G|606
4V9Q|1|BA|A|607
4V9Q|1|BA|A|608
4V9Q|1|BA|A|609
4V9Q|1|BA|G|610
4V9Q|1|BA|A|611
4V9Q|1|BA|C|612
*
4V9Q|1|BA|G|628
4V9Q|1|BA|G|629
4V9Q|1|BA|G|630
4V9Q|1|BA|G|631
4V9Q|1|BA|A|632
4V9Q|1|BA|G|633
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain BH
- 30S ribosomal protein S8
- Chain BP
- 30S ribosomal protein S16
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