3D structure

PDB id
4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9Q_145 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0972
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V9Q|1|BA|C|779
4V9Q|1|BA|A|780
4V9Q|1|BA|A|781
4V9Q|1|BA|A|782
4V9Q|1|BA|C|783
*
4V9Q|1|BA|G|799
4V9Q|1|BA|G|800
4V9Q|1|BA|U|801
4V9Q|1|BA|A|802
4V9Q|1|BA|G|803

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain BK
30S ribosomal protein S11

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1501 s
Application loaded.