IL_4V9Q_208

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_208 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.1315

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V9Q|1|CA|G|875
4V9Q|1|CA|C|876
4V9Q|1|CA|U|877
*
4V9Q|1|CA|A|899
4V9Q|1|CA|A|900
4V9Q|1|CA|A|901
4V9Q|1|CA|C|902

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25