IL_4V9Q_212

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V9Q|1|CA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_212 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1186

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

4V9Q|1|CA|C|994
4V9Q|1|CA|C|995
4V9Q|1|CA|A|996
*
4V9Q|1|CA|U|1159
4V9Q|1|CA|G|1160

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CJ

50S ribosomal protein L13

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21

Chain CZ

50S ribosomal protein L30