IL_4V9Q_221

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V9Q|1|CA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_221 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0992

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V9Q|1|CA|C|1208
4V9Q|1|CA|G|1209
4V9Q|1|CA|A|1210
4V9Q|1|CA|U|1211
4V9Q|1|CA|G|1212
4V9Q|1|CA|A|1213
4V9Q|1|CA|A|1214
4V9Q|1|CA|G|1215
*
4V9Q|1|CA|U|1234
4V9Q|1|CA|G|1235
4V9Q|1|CA|G|1236
4V9Q|1|CA|A|1237
4V9Q|1|CA|G|1238

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CQ

50S ribosomal protein L20