IL_4V9Q_247

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_247 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1433

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V9Q|1|CA|U|1851
4V9Q|1|CA|C|1852
4V9Q|1|CA|A|1853
4V9Q|1|CA|A|1854
4V9Q|1|CA|G|1855
*
4V9Q|1|CA|C|1887
4V9Q|1|CA|G|1888
4V9Q|1|CA|A|1889
4V9Q|1|CA|A|1890
4V9Q|1|CA|G|1891

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DW

Transfer RNA; tRNA