IL_4V9Q_250

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V9Q|1|CA|A|1938, 4V9Q|1|CA|U|1944, 4V9Q|1|CA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_250 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1168

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V9Q|1|CA|C|1934
4V9Q|1|CA|G|1935
4V9Q|1|CA|A|1936
4V9Q|1|CA|A|1937
4V9Q|1|CA|A|1938
4V9Q|1|CA|U|1939
4V9Q|1|CA|U|1940
4V9Q|1|CA|C|1941
4V9Q|1|CA|C|1942
4V9Q|1|CA|U|1943
4V9Q|1|CA|U|1944
4V9Q|1|CA|G|1945
*
4V9Q|1|CA|C|1961
4V9Q|1|CA|C|1962
4V9Q|1|CA|U|1963
4V9Q|1|CA|G|1964

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA