IL_4V9Q_259

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4V9Q|1|CA|C|2164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_259 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.5835

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|CA|G|2124
4V9Q|1|CA|G|2125
4V9Q|1|CA|A|2126
4V9Q|1|CA|G|2127
*
4V9Q|1|CA|C|2161
4V9Q|1|CA|G|2162
4V9Q|1|CA|C|2163
4V9Q|1|CA|C|2164
4V9Q|1|CA|G|2165
4V9Q|1|CA|G|2166
4V9Q|1|CA|U|2167
4V9Q|1|CA|G|2168
4V9Q|1|CA|A|2169
4V9Q|1|CA|A|2170
4V9Q|1|CA|A|2171
4V9Q|1|CA|U|2172
4V9Q|1|CA|A|2173
4V9Q|1|CA|C|2174

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DW

Transfer RNA; tRNA