3D structure

PDB id
4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9Q_267 not in the Motif Atlas
Homologous match to IL_7A0S_087
Geometric discrepancy: 0.1567
The information below is about IL_7A0S_087
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V9Q|1|CA|C|2466
4V9Q|1|CA|C|2467
4V9Q|1|CA|G|2468
4V9Q|1|CA|A|2469
4V9Q|1|CA|G|2470
*
4V9Q|1|CA|C|2480
4V9Q|1|CA|G|2481
4V9Q|1|CA|G|2482
4V9Q|1|CA|C|2483
4V9Q|1|CA|G|2484

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CM
50S ribosomal protein L16
Chain CV
50S ribosomal protein L25

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3678 s