IL_4V9Q_312
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_312 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1021
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
4V9Q|1|DA|U|580
4V9Q|1|DA|G|581
4V9Q|1|DA|U|582
4V9Q|1|DA|A|583
4V9Q|1|DA|G|584
*
4V9Q|1|DA|U|757
4V9Q|1|DA|G|758
4V9Q|1|DA|A|759
4V9Q|1|DA|G|760
4V9Q|1|DA|G|761
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DH
- 30S ribosomal protein S8
- Chain DL
- 30S ribosomal protein S12
- Chain DO
- 30S ribosomal protein S15
- Chain DQ
- 30S ribosomal protein S17
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