IL_4V9Q_323

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_323 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0587

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9Q|1|DA|G|887
4V9Q|1|DA|G|888
4V9Q|1|DA|A|889
4V9Q|1|DA|G|890
4V9Q|1|DA|U|891
4V9Q|1|DA|A|892
4V9Q|1|DA|C|893
4V9Q|1|DA|G|894
*
4V9Q|1|DA|U|905
4V9Q|1|DA|G|906
4V9Q|1|DA|A|907
4V9Q|1|DA|A|908
4V9Q|1|DA|A|909
4V9Q|1|DA|C|910

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DL

30S ribosomal protein S12

Chain DQ

30S ribosomal protein S17